Methodology
This is a study about the effects of vitamin C over the number of odontoblasts (cells responsible for tooth growth) of 60 guinea-pigs. If the number of odontoblasts grows, so does the teeth of the pigs.
Each pig received one of three different dosages of vitamin C: 0.5, 1 or 2 mg/day.
Each pig was treated by one of two different delivery methods: via orange juice or via ascorbic acid (VC)
We are going to test some hypothesis about the vitamin C influence over tooth growth.
There is not a control group.
Summary of the data
Here is a brief summary of data:
## 'data.frame': 60 obs. of 3 variables:
## $ len : num 4.2 11.5 7.3 5.8 6.4 10 11.2 11.2 5.2 7 ...
## $ supp: Factor w/ 2 levels "OJ","VC": 2 2 2 2 2 2 2 2 2 2 ...
## $ dose: num 0.5 0.5 0.5 0.5 0.5 0.5 0.5 0.5 0.5 0.5 ...
## len supp dose
## Min. : 4.20 OJ:30 Min. :0.500
## 1st Qu.:13.07 VC:30 1st Qu.:0.500
## Median :19.25 Median :1.000
## Mean :18.81 Mean :1.167
## 3rd Qu.:25.27 3rd Qu.:2.000
## Max. :33.90 Max. :2.000

Tooth Growth data
OJ means Orange Juice while VC means ascorbic acid.
Hypothesis testing
Vitamin C Dosis
Since the pigs were treated with different doses of Vitamin C, the first question we need to address is whether the amount of vitamin C administered to each pig does any difference in their tooth growth.
The different doses were:
## [1] 0.5 1.0 2.0
So, since there is not a control group, lets test the hypothesis that the doses matter: is the growth associated with the 2.0 mg doses greater than the growth associated with 0.5 doses?
\[H_0: \mu_{0.5 mg} = \mu_{2.0 mg} \leftrightarrow H_\alpha: \mu_{2.0 mg} > \mu_{0.5 mg} \]
Lets split the 2 groups and test the hypothesis through a one-sided T-test
g05 <- subset(dados$len, dados$dose == 0.5)
g2 <- subset(dados$len, dados$dose == 2)
t.test(g2, g05, alternative = "greater", paired = FALSE, var.equal = FALSE)
##
## Welch Two Sample t-test
##
## data: g2 and g05
## t = 11.799, df = 36.883, p-value = 0.00000000000002199
## alternative hypothesis: true difference in means is greater than 0
## 95 percent confidence interval:
## 13.27926 Inf
## sample estimates:
## mean of x mean of y
## 26.100 10.605
Notice the very small p-value.
Just for comparison, lets do this test by hand through its confidence interval:
n2 <- length(g2)
n05 <- length(g05)
sd2 <- sd(g2)
sd05 <- sd(g05)
se1 <- sqrt(((n2-1)*sd2^2 + (n05-1)*sd05^2) / (n2 + n05 -2))
se2 <- sqrt(1/n2 + 1/n05)
se <- se1*se2
ci <- mean(g2) - mean(g05) + c(-1,1)*qt(.95,df = (n2+n05 -2))*se
ci <- round(ci,2)
ci
## [1] 13.28 17.71
Notice that 0 isn’t in the confidence interval, so \(\mu_{0.5 mg} - \mu_{2.0 mg} \neq 0\), ever! The true difference of means will always be between 13.28, 17.71 mm.
We can infer by this 95% test that \(H_0\) must be rejected and therefore, a larger dosis results in larger tooth growth!
Vitamin C Delivery Method
What is the best delivery method?
The delivery methods are:
## [1] VC OJ
## Levels: OJ VC
OJ means Orange Juice while VC means ascorbic acid.

Tooth Growth by delivery method
Lets test the null hypothesis that the deliver methods yields the same results:
\[H_0: \mu_{juice} = \mu_{acid} \leftrightarrow H_\alpha: \mu_{juice} \neq \mu_{acid}\]
The first thing to do is to separate the data between the two delivery methods and then run a two-sided T-test on the groups.
juicers <- subset(dados$len, dados$supp=="OJ")
trippin <- subset(dados$len, dados$supp=="VC")
t.test(juicers, trippin, paired = FALSE, var.equal = FALSE, alternative = "two.sided")
##
## Welch Two Sample t-test
##
## data: juicers and trippin
## t = 1.9153, df = 55.309, p-value = 0.06063
## alternative hypothesis: true difference in means is not equal to 0
## 95 percent confidence interval:
## -0.1710156 7.5710156
## sample estimates:
## mean of x mean of y
## 20.66333 16.96333
Interesting enough, the T-test yields a confidence interval and a p-value that led us to fail to reject \(H_0\).
Therefore, the two delivery methods produces the same results
Results
As we can see through the T-tests performed, we can infer that:
- a larger doses results in larger tooth growth
- the two delivery methods produces the same results